I think there is some misinformation floating on this thread right now.
The tractor was originally split
between the clutch housing and transmission to replace a leaking transmission input shaft seal, which Paul was successful with. No clutch work at all.
The tractor so far has
not been split at the clutch housing. Thus all the clutch components should be fine and slip right in, like the pilot bushing, the input shaft, etc. The pilot bushing has not been replaced either.
Unless Paul can somehow push down the clutch AND wedge an alignment tool through the hand hole plus the throw out bushing AND center the disk all at the same time, a regular alignment tool is not going to work. Hence the improvisation part of this thread.
This is the OP's best option right now without splitting the tractor again. I know some of you could split it again quickly, but tools and/or shop space might be limited. It is still possible to fix this without splitting at the engine, but it takes time and patience.
Going forward, I strongly encourage people to read the entire thread so they have all the necessary information
before posting.
@Paul 300 U please correct me if I'm wrong at all.